师资队伍

孙桂玲

   孙桂玲,女,博士,教授,硕士生导师

   2001毕业于河南大学生物教育专业,获学士学位;2007年在中国科学院昆明动物研究所获博士学位,研究方向为动物学;2007.7-2009.1,在中国科学院昆明动物所遗传资源与进化国家重点实验室担任助理研究员;2009.2-2011.10,在美国EastCarolina University做博士后,研究方向为真核基因组进化;2011.11-2016.6,在中国科学院昆明植物所担任副研究员、硕士生导师,期间于2015.4-2015.7,赴德国慕尼黑大学做学术访问,参与寄生植物基因组分析研究;2016.7-今,受聘为河南大学黄河学者(教授)。Mol Biol Evol、Plant, Cell & Environment、BMC Evol Biol、BMC Plant Biol、BMC Genomics、Plant Mol Biol等国际著名SCI刊物上发表论文7篇,累积影响因子38.494,被引用次数多达150余次;主持国际自然科学基金项目2项,主持省部级项目5项。

研究方向

主要从事进化比较基因组学和植物重要种质资源基因挖掘。包括水平基因转移(HGT)在单细胞真核生物、低等动物和高等植物中的发生规模、分子功能、对受体生物的适应性进化意义、发生分子机制。在多组学水平深入研究重要功能基因家族(转录因子、信号转导蛋白、次生代谢关键调控基因等)、microRNAs、长链非编码RNA等在农作物(玉米、棉花、小麦)和能源植物(柳枝稷)中参与非生物(旱、盐等)和生物(昆虫)胁迫的耐受响应和可能的生理功能。

代表性研究论文:

1.        Pan Y., Wang X., Sun G., Li F., and Gong X. Application of RAD Sequencing forEvaluating the Genetic Diversity of Domesticated Panax notoginseng (Araliaceae). PLoS One. 2016. 11(11):e0166419.

2.        Lin J., Wilson I. W., Ge G., Sun G., Xie F., Yang Y. Wu L., Zhang B.Wu J. Zhang Y., and Qiu D. Whole transcriptome analysis of three leaf stages intwo cultivars and one of their F1 hybrid of Camelliasinensis L. with differing EGCG content. Tree Genetics & Genomes 2017.13:13 DOI 10.1007/s11295-016-1089-5

3.        Sun T., Renner S.S., Xu Y., Qin Y., WuJ., and Sun G.* Two hATtransposon genes were transferred from Brassicaceae to broomrapes and areactively expressed in some recipients. Sci Rep. 2016. 6:30192.

4.        Sun T., Xu Y., Zhang D., Zhuang H., WuJ., and Sun G.* Anacyltransferase gene that putatively functions in anthocyanin modification washorizontally transferred from Fabaceae into the genus Cuscuta [J]. Plantdiversity, 2016.

5.        Bellot S., Cusimano N., Luo S., Sun G., Zarre S., Gröger A., Temsch E.,and Renner S.S. Assembled Plastid and Mitochondrial Genomes, as well as NuclearGenes, Place the Parasite Family Cynomoriaceae in the Saxifragales. Genome BiolEvol. 2016. 8(7):2214-30.

6.        Yang Y., Zhu K., Wu J., Liu L., Sun G., He Y., Chen F., and Yu D.Identification and characterization of a novel NAC-like gene in chrysanthemum (Dendranthema lavandulifolium). PlantCell Rep. 2016. 35(8):1783-98.

7.        Qi J. †, Sun G.†, Wang L.†, Zhao C., Hettenhausen C., Schuman M., BaldwinI., Li J., Song J., Liu Z., Xu G., Lu X., and Wu J. * 2016. Oral secretions fromMythimna separata insects specifically induce defense responses in maize asrevealed by high-dimensional biological data. Plant, Cell &Environment.

8.        Hettenhausen C., SunG., He Y., Zhuang H., SunT., Qi J., and Wu J. 2016. Genome-wide identification of calcium-dependentprotein kinases in soybean and analyses of their transcriptional responses toinsect herbivory and drought stress. Scientific Reports.6:18973.

9.        Liu Y., Luo S., Schmidt A., GershenzonJ., Wang G., Sun G., Grant M., KuangC., Yang M., Jing S., Li C., Schneider B., and Li S. 2016. A geranylfarnesyldiphosphate synthase provides the precursor for sesterterpenoid (C25) formationin the glandular trichomes of Leucosceptrumcanum. The Plant Cell. pii: tpc.00715.2015.

10.    Li J., Hettenhausen C., Sun G., Zhuang H., Li J.H., and Wu J.2015. The parasitic plant Cuscutaaustralis is highly insensitive to abscisic acid-induced suppression ofhypocotyl elongation and seed germination. PLoS One.10(8): e0135197.

11.    Zhang Q., Liu H., Sun G., Wilson I. W., Wu J., Hoffman, A., Cheng J., and Qiu D.2015. Survey of Root-Associated Microbes of Taxuschinensis (Pilger) Rehd. PLoS ONE. 10(3): e0123026.

12.    Sun H., Wang L., Zhang B., Ma J., HettenhausenC., Cao G., Sun G., Wu J., and Wu J.Scopoletin is a phytoalexin against Alternariaalternata in wild tobacco dependent on jasmonate signalling. J Exp Bot.65(15):4305-15. 2014.

13.    Sun H., Hu X., Ma J., Hettenhausena C.,Wang L., Sun G., Wu J., and Wu J.2014. Requirement of ABA signalling-mediated stomatal closure for resistance ofwild tobacco to Alternaria alternata.Plant Pathology 63, 1070-1077.

14.    Zhang D., Qi J., Yue J., Huang J., SunT., Li S., Wen J., Hettenhausen C., Wu J., Wang L., Zhuang H., Wu J., and Sun G.*2014. Root parasitic plant Orobancheaegyptiaca and shoot parasitic plant Cuscutaaustralis obtained Brassicaceae-specific strictosidine synthase-like genesby horizontal gene transfer.BMCPlant Biol. 14:19. (IF=3.9,Q1)

15.    Zhang N.,Han Z., Sun G., Hoffman A.,Wilson IW., Yang Y., Gao Q., Wu J., Xie D., Dai J., and Qiu D. 2014.Molecular cloning and characterization of a cytochrome P450 taxoid9á-hydroxylase in Ginkgo biloba cells.Biochem Biophys Res Commun. 443(3):938-43.

16.    Yang Y.,Zhao H., Barrero R.A., Zhang B.,Sun G.,Wilson I.W., Xie F., Walker K.D., Parks J.W., Bruce R., Guo G., Chen L., ZhangY., Huang X., Tang Q., Liu H., Bellgard M.I., Hoffman A., Lai J., and Qiu D.2014. Genome sequencing and analysis of the paclitaxel-producing endophyticfungus Penicillium aurantiogriseumNRRL 62431. BMC Genomics. 15:69.

17.    Yue J.,Sun G., Hu X., and Huang J. 2013. The scale and evolutionarysignificance of horizontal gene transfer in the choanoflagellate Monosiga brevicollis. BMC genomics,14:729.

18.    SunG., Yang Y., Xie F., Wen J., WuJ., Wilson I.W., Tang Q., Liu H., and Qiu D. 2013. Deep Sequencing RevealsTranscriptome Re-Programming of Taxus ×media Cells to the Elicitation with Methyl Jasmonate. PLoS ONE 8(4):e62865.

19.    SunG. and Zhang B. 2012. MicroRNA Expression Analysis in the CellulosicBiofuel Crop Switchgrass (Panicum virgatum) underAbiotic Stress. PLoS ONE. 7: e32017.

20.    Ni T., Yue J., Sun G., Zou Y., Wen J., Huang J. 2012.Ancientgene transfer from algae to animals: Mechanisms and evolutionary significance.BMC Evol Biol 12: 83.

21.    SunG., FuX., and Zhang B. 2011. Transcriptome-wideidentification and stress properties of 14-3-3 gene family in cotton(Gossypium hirsutum L.). Functional& Integrative Genomics. 11:627-636.

22.    Xie F., Sun G., Stiller J., and Zhang B. 2011. Genome-wide functionalanalysis of the cotton transcriptome by creating an integrated EST database.PLOS One. 6:e26980.

23.    Frazier T., Sun G., Burklew C., and Zhang B. 2011. Salt and DroughtStresses Induce the Aberrant Expression of microRNA Genes in Tobacco.Molecular Biotechnology.49:159-165.

24.     Sun G.,Yang Z., Kosch T., Summers K., and Huang J. 2011. Evidence foracquisition of virulence effectors in pathogenic chytrids. BMCEvolutionary Biology. 11: 195.

25.     Sun G.and Huang J. 2010. Horizontally acquired DAP pathway as a self-regulation unit.Journal of Evolutionary Biology. 24: 587-95.

26.     Sun G.,Yang Z., Ishwar A., and Huang J.* 2010. Algal genes in the closest relatives of animals. MolecularBiology and Evolution. 27: 2879-2889.

27.     HuangJ., Sun G.,and Zhang D.* 2010. Molecular evolution and phylogeny of theangiosperm ycf2 gene. Journal of Systematics and Evolution. 48:1759-6831.

28.     TianJ., Sun G.,Ding Q., Huang J., Oruganti S., and Xie B. 2011. AlienG:an effective computational tool for phylogenomic identification of horizontallytransferred genes. 3rd International Conference on Bioinformatics andComputational Biology (BICoB). P13-18.

29.     Sun G.,Shen W., and Wen J. 2008. Triosephosphate Isomerase Genes in Two TrophicModes of Euglenoids (Euglenophyceae) and Their Phylogenetic Analysis.Journal of eukaryotic microbiology. 55:170-177.

30.     ShenW., Wen J., Sun G.,and Lu Y. 2005. Identification of TIM genes from Microcystis (Cyanobacteria:Chroococcales) and theoretic analyses of the potential of cyanobacterial TIM asa target for designing specific inhibitors. Phycologia. 44: 447–452.

31.     Sun G.2012. MicroRNAs and their diverse functions in plants. PlantMolecular Biology. 80:17-36. (IF=4.2, Q2)

32.     Sun G.,Jiang Y., and Wen J. 2008. The evolution of metabolic pathway. ZoologicalResearch. 29:414-420.

33.     Sun G.,Wang Q., and Zhang B. 2011. MicroRNAs in Cotton. Non Coding RNAs in Plants.RNA Technologies. 301-312

34.     孙桂玲,江永海,文建凡.2008. 代谢途径的进化.动物学研究.29:414-420.

35.     申望,文建凡,孙桂玲,董锦润. 2004. 腐生型眼虫Astasialonga两种TIM同工酶cDNA的克隆和分析. 动物学报. 50: 414-419.

讲授课程:

1 生物信息学

2 Python基础